/home/converse/pub_html/rhesusROIs/112RM-SL_symmetrized/Brain_images/temp_labeled akc 11 june 2015 20150611 orientation labels fslchfiletype NIFTI_GZ 112RM-SL_symmetrized.hdr 112RM-SL_symmetrized cp 112RM-SL_symmetrized.nii.gz 112RM-SL_symmetrized_20150611.nii.gz fslorient -setqformcode 1 112RM-SL_symmetrized_20150611.nii.gz fslview 112RM-SL_symmetrized_20150611.nii.gz & appears with LR and correct IS and AP labels L on image R smoothing (for alignment targets - sm1mm approximates uPET resolution, sm1mm_sm1mm target for smoothed uPET images) [converse@poblano temp_labeled]$ fslmaths 112RM-SL_symmetrized_20150611 -s 1.0 112RM-SL_symmetrized_20150611_sm1mm [converse@poblano temp_labeled]$ fslmaths 112RM-SL_symmetrized_20150611_sm1mm -s 1.0 112RM-SL_symmetrized_20150611_sm1mm_sm1mm reference wb mask [converse@poblano temp_labeled]$ cp 112RM-SL_symmetrized_gt6520_sm2mm.nii.gz 112RM-SL_symmetrized_gt6520_sm2mm_20150611.nii.gz [converse@poblano temp_labeled]$ fslorient -setqformcode 1 112RM-SL_symmetrized_gt6520_sm2mm_20150611.nii.gz 20150630 non-smoothed wb mask as above: 112RM-SL_symmetrized_gt6520_20150630.nii.gz