FMRI Data Processing Stages: A Brief Synopsis


Motion correction and registration

http://brainimaging.waisman.wisc.edu/~tjohnstone/time_series.jpeg

http://www.fmrib.ox.ac.uk/fslcourse/lectures/flirt_fugue/s_4060artefacts.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/flirt_fugue/s_4060artefacts.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/flirt_fugue/s_7025.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/flirt_fugue/s_7055.htm


Single subject GLM analysis

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_2100_title.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_2710_corr.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_2720_glmest.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_3640_basisfns.htm

http://brainimaging.waisman.wisc.edu/~tjohnstone/single_analysis.jpeg



Multiple subject GLM analysis

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_4004_levels.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_4005_levels.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_4007_levels.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_4009_fixedrandom.htm

http://brainimaging.waisman.wisc.edu/~tjohnstone/group_anal.jpeg



Thresholding

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_2800_thresh.htm

http://www.fmrib.ox.ac.uk/fslcourse/lectures/fmri/s_2820_thresh.htm