Equipment in the control room
- Biopac and Eprime connections.
- Port assignments on the stimulus presentation computer.
- Wiring in the MRI suite.
Analyzing fMRI Data
- preprocess: Reconstruction through fieldmap correction.
- Spatial Normalization: AFNI vs. SPM vs. FSL.
- Censoring (ignoring) EPI frames with excessive motion.
- Fieldmap Correction
- First Level Analysis.
- Spatial Normalization
Computers and Networks.
- Where things are - the apps partition.
Specific Commands:
- Applications developed here.
- Useful commands
- Obscure bash syntax
Miscellaneous
- Using Python in the lab
Downloads
Lectures and Seminars
- Preprocessing EPIs and first level analysis. September 2008
- Orientation for new lab members. October 2008
- Pulse sequence issues. January 2009
Scanner
- Reconstructing EPI data acquired with the epibold sequence. (Legacy data only. No new studies should acquire data with epibold.)
- Pulse sequence development tools.
Methods list
(This list is open to the UW community. Send me an email to be added to the list.)
